PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000616.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 168aa    MW: 19161.9 Da    PI: 9.0774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000616.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000794062123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C k F++   L  H  +H
  Itr_sc000616.1_g00013.1 40 FECKTCQKKFKSFQALGGHRASH 62
                             89**********99999998887 PP

2zf-C2H211.50.0009483105123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp Cg  F     L  H+r+H
  Itr_sc000616.1_g00013.1  83 HECPVCGLEFDLGQALGGHMRKH 105
                              79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0974067IPR007087Zinc finger, C2H2
SMARTSM003550.24062IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.62E-640105No hitNo description
PfamPF139123.4E-104064IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139121.9E-982108IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78583115IPR007087Zinc finger, C2H2
SMARTSM003550.1883105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTLKRSREEV AAEAEALAMA NCLVLLSRPA EKTAPSIWEF ECKTCQKKFK SFQALGGHRA  60
SHKRPKIDQQ NLQHNNVNMK KRHECPVCGL EFDLGQALGG HMRKHRDQLH SDDKKSPDSF  120
TVTTVKNEEH STGIKKKNEV LIDLNFTLLE NDSIVHRRFV PTTLDLFV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-29C2H2 family protein